bioc_integration {explorase} | R Documentation |
Functions loading and retrieving Bioconductor ExpressionSet objects to and from exploRase.
exp_loadExpressionSet(exprset, type = exp_entityType()) exp_phenoData(type = exp_entityType()) exp_featureData(type = exp_entityType()) exp_expressionSet(type = exp_entityType())
exprset |
The |
type |
The type of the biological entity (e.g. gene). |
To load a ExpressionSet
instance into exploRase, call
exp_loadExpressionSet
.
The function exp_expressionSet
retrieves the
ExpressionSet
representing the data stored in exploRase for the
given entity type. exp_phenoData
and exp_featureData
retrieve only the phenoData
and featureData
components,
respectively.
For exp_expressionSet
, an ExpressionSet
.
For exp_phenoData
, an AnnotatedDataFrame
representing
the phenotype data (i.e. experimental design, see
exp_designFrame
).
For exp_featureData
, an AnnotatedDataFrame
representing
the feature annotations (i.e. the entity info, see
exp_entityFrame
).
Michael Lawrence
explorase
for loading data and starting
exploRase in one call. exp_designFrame
, exp_entityFrame
,
exp_dataset
, etc for retrieving data from exploRase.