readGR {epihet}R Documentation

Make GenomicRanges Object

Description

Creates a GenomicRanges file for a singular methclone ouput file

Usage

readGR(files, ids, n)

Arguments

files

A vector of files containing methcolone output

ids

A vector of sample ids for the files

n

The index of the file vector to be read

Value

A GenomicRanges object containing pdr, epipolymorphism, and Shannon entropy values for the nth file

Examples

files <- c(system.file("extdata","D-2238.chr22.region.methClone_out.gz",package = "epihet"),
system.file("extdata","D-2668.chr22.region.methClone_out.gz",package = "epihet"),
system.file("extdata","N-1.chr22.region.methClone_out.gz",package = "epihet"),
system.file("extdata","N-2.chr22.region.methClone_out.gz",package = "epihet"))
ids <- epihet::splitn(basename(files),"[.]",1)
GR.Object <- epihet::readGR(files = files, ids = ids, n = 3)

[Package epihet version 1.0.0 Index]