moduleSim {epihet} | R Documentation |
Compare any two modules from two subytpes based on genes shared by the modules
moduleSim(module.subtype1, module.subtype2, pdf.height = 10, pdf.width = 10, sve = FALSE)
module.subtype1 |
a data frame generated from the epiNetwork() function the module information of subtype1,the first column is module nodes,the second column is module label, the third column is module color |
module.subtype2 |
a data frame generated from the epiNetwork() function. The module information of subtype1, the first column is module nodes, the second column is module label, the third column is module color |
pdf.height |
An integer representing the height (in inches) of the outputted boxplot pdf file (default: 10) |
pdf.width |
An integer representing the width (in inches) of the outputted boxplot pdf file (default: 10) |
sve |
A boolean to save the plot (default: FALSE) |
a matrix containing Jaccard scores
data(modulesil,package = "epihet") data(moduledm,package = "epihet") sim.score<-epihet::moduleSim(module.subtype1=modulesil, module.subtype2=moduledm, pdf.height = 10,pdf.width = 10, sve = TRUE)