loadAllData {deepSNV}R Documentation

Function to load all data from a list of bam files

Description

This function uses the parallel package and the bam2R interface to load all nucleotide counts from a list of bam files and a set of regions into a large array.

Usage

loadAllData(files, regions, ..., mc.cores = 1)

Arguments

files

A character vector with the paths to all bam files

regions

Either a GRanges or data.frame with the coordinates of interest

...

Arguments passed to bam2R

mc.cores

Number of cores used for loading, default = 1

Value

counts

Note

Experimental code, subject to changes

Author(s)

mg14


[Package deepSNV version 1.30.0 Index]