trueSNVs {deepSNV} | R Documentation |
Two .bam alignments as example data sets are downloaded remotely via http. Sequenced were a 1,512 nt fragment of the HIV genome and a mixture (90% + 10%) with another variants. The two sequences were confirmed by Sanger sequencing and stored in the table trueSNVs.
data(HIVmix) data(trueSNVs) table(p.adjust(p.val(HIVmix), method="BH") < 0.05, trueSNVs)