LLSn2List {dSimer}R Documentation

convert data.frame of HumanNet log-likelihood Score to list

Description

convert HumanNet normalized log-likelihood score from data.frame to list, which will be used in FunSim method

Usage

LLSn2List(LLSn)

Arguments

LLSn

data.frame of gene-gene normalized log-likelihood score in HumanNet

Value

a list of normalized log-likelihood score

Author(s)

Peng Ni, Min Li

References

Cheng L, Li J, Ju P, et al. SemFunSim: a new method for measuring disease similarity by integrating semantic and gene functional association[J]. PloS one, 2014, 9(6): e99415.

See Also

FunSim

Examples

## see examples in function FunSim
data(HumanNet_sample)
llsnlist<-LLSn2List(HumanNet_sample[1:100,])
llsnlist

[Package dSimer version 1.10.0 Index]