pfm {cobindR} | R Documentation |
pfm list used in experiment
## S4 method for signature 'cobindr' pfm(x) ## S4 replacement method for signature 'cobindr,list' pfm(x) <- value
x |
a cobindr object |
value |
a list of motif matrices |
pfm (list of motif matrices)
Rob Lehmann <r.lehmann@biologie.hu-berlin.de>
uid
,name
,sequences
,bg_sequences
,desc
,configuration
,binding_sites
,bg_binding_sites
,pfm
,pairs
,bg_pairs
,pairs_of_interest
cfg <- cobindRConfiguration() sequence_type(cfg) <- 'fasta' sequence_source(cfg) <- system.file('extdata/sox_oct_example_vignette_seqs.fasta',package='cobindR') sequence_origin(cfg) <- 'Mouse Embryonic Stem Cell Example ChIP-Seq Oct4 Peak pfm' cbr <- cobindr(cfg) pfm(cbr)