experiment_description {cobindR} | R Documentation |
description of cobindR or configuration object
## S4 method for signature 'configuration' experiment_description(x) ## S4 replacement method for signature 'configuration,character' experiment_description(x) <- value ## S4 method for signature 'cobindr' experiment_description(x) ## S4 replacement method for signature 'cobindr,character' experiment_description(x) <- value
x |
a cobindR or configuration object |
value |
description |
experiment description (character)
Rob Lehmann <r.lehmann@biologie.hu-berlin.de>
id
,experiment_description
,sequence_source
,sequence_origin
,sequence_type
,bg_sequence_source
,bg_sequence_origin
,bg_sequence_type
,species
,downstream
,upstream
,max_distance
,pairs
,pfm_path
,threshold
,fdrThreshold
,path
,mart
,pValue
cfg <- cobindRConfiguration() experiment_description(cfg) sequence_type(cfg) <- 'fasta' sequence_source(cfg) <- system.file('extdata/sox_oct_example_vignette_seqs.fasta',package='cobindR') sequence_origin(cfg) <- 'Mouse Embryonic Stem Cell Example ChIP-Seq Oct4 Peak desc' cbr <- cobindr(cfg) experiment_description(cbr)