write.bindingsites {cobindR} | R Documentation |
writes predicted binding sites as a BED file.
## S4 method for signature 'cobindr' write.bindingsites(x, file = NULL, background = FALSE)
x |
an object of the class "cobindr", which holds all necessary information about the sequences and the predicted binding sites. |
file |
path to file. If filename is 'NULL' a filename is generated based on the name of the object of class "cobindr". |
background |
logical flag. If background is 'TRUE' the binding sites found in the background sequences are used. |
At the moment write.bindingsites() only works for sequences based on gene ids. Otherwise please use write.bindingsites.table().
Stefan Kroeger <kroeger@informatik.hu-berlin.de>
write.bindingsites.table
, write.pairs
, write.sequences
, write