HD59 {coRdon}R Documentation

Codon usage in healthy human gut microbiome.

Description

A codonTable object with codon counts for sequences of the human gut metagenome, from a healthy individual. Raw sequences are from Quin et al. 2014, processed, assembled and annotated (KEGG Orthology) as descrbed in Fabijanic and Vlahovicek 2016. Due to size limitations, a sample of 1000 sequences from the original data is used.

Usage

HD59

Format

A codonTable object.

Source

Quin et al. 2014; Fabijanic and Vlahovicek 2016


[Package coRdon version 1.2.0 Index]