celdaHeatmap,celda_C-method {celda} | R Documentation |
Renders an expression heatmap to visualize 'celda_C()' results. Features to include in the heatmap must be supplied.
## S4 method for signature 'celda_C' celdaHeatmap(counts, celdaMod, featureIx, ...)
counts |
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'. |
celdaMod |
Celda object of class 'celda_C'. |
featureIx |
Integer vector. Indices of features to plot, such the top features from a differential expression analysis. |
... |
Additional parameters. |
list A list containing dendrograms and the heatmap grob
'celda_C()' for clustering cells and 'celdaTsne()' for generating 2-dimensional coordinates
data(celdaCSim, celdaCMod) celdaHeatmap(celdaCSim$counts, celdaCMod)