bioNetCircosPlot {caOmicsV} | R Documentation |
Plot one track of caOmics data on each node of a biological network. Supported plot types include polygon, bar, points, heatmap, and lines.
bioNetCircosPlot(dataValues=NULL, plotType="polygon", outer, inner, plotColors=NULL, maxValue=NULL, minValue=NULL)
dataValues |
an numeric matrix with columns for samples and rows for genes |
plotType |
character vector for plot type, supporting polygon, points, and lines. |
outer |
non-negative numeric, outer location of a data track |
inner |
non-negative numeric, inner location of a data track |
plotColors |
character vector specifying colors for plot items |
maxValue |
numeric, the biggest value of plot data or user defined top threshold. Set to NULL to use the biggest value in dataset. |
minValue |
numeric, the smallest value of plot data or user defined bottom threshold. Set to NULL to use the smallest value in dataset. |
None
Henry Zhang
data(bionetPlotDemoData) expr <- bionetPlotDemoData$heatmapData[[1]] bioNet <- bc3net(expr) initializeBioNetCircos(bioNet, totalSamples=60) showBioNetNodesLayout() binaryData <- bionetPlotDemoData$binaryData[[1]] sampleColors <- c(rep("blue", ncol(binaryData))) plotType <- "points" inner <- 2 outer <- 3 bioNetCircosPlot(binaryData, plotType, outer, inner, sampleColors)