artmsSpectralCounts {artMS}R Documentation

Outputs the spectral counts from the MaxQuant evidence file.

Description

Outputs the spectral counts from the MaxQuant evidence file.

Usage

artmsSpectralCounts(evidence_file, keys_file, output_file = NULL,
  verbose = TRUE)

Arguments

evidence_file

(char) Maxquant evidence file or data object

keys_file

(char) Keys file with the experimental design or data object

output_file

(char) Output file name (add .txt extension). If NULL (default) it returns a data.frame object

verbose

(logical) TRUE (default) shows function messages

Value

A txt file with biological replicates, protein id, and spectral count columns

Examples

summary_spectral_counts <- artmsSpectralCounts(
                                 evidence_file = artms_data_ph_evidence,
                                 keys_file = artms_data_ph_keys)

[Package artMS version 1.2.7 Index]