tpptrTidyUpESets {TPP} | R Documentation |
Convert list of expressionSets (intermediate output of several TPP-TR functions) to tidy tables.
tpptrTidyUpESets(tppESetList, returnType = "exprs")
tppESetList |
A list of expressionSets, returned by most TPP-TR functions. |
returnType |
A string with two possible values: "exprs", "featureData". |
expressionSet lists are for example produced by
tpptrImport
, tpptrNormalize
,
tpptrCurveFit
.
Either the fold changes per protein across all experiments
(if returnType = "exprs"
), or the
additional annotation per protein and experiment (if returnType = "featureData"
). For example, the
peptide counts per identified protein can be found here.
data(hdacTR_smallExample) tpptrData <- tpptrImport(configTable = hdacTR_config, data = hdacTR_data) concentrations <- tpptrTidyUpESets(tpptrData) additionalInfos <- tpptrTidyUpESets(tpptrData, returnType = "featureData") summary(concentrations)