plotKM {TNBC.CMS} | R Documentation |
Produces Kaplan-Meier survival curves for each subtype.
plotKM(pred, time, event)
pred |
A vector of predicted consensus molecular subtypes. |
time |
A vector of the follow-up time. |
event |
A vector representing survival status (0 = alive, 1 = dead). |
A ggplot
object.
# Load clinical information of TNBC samples data(GSE25055) DFS.status <- colData(GSE25055)$DFS.status DFS.month <- colData(GSE25055)$DFS.month # Predict consensus molecular subtypes of TNBC samples prediction <- predictCMS(expr = GSE25055) # Plot Kaplan-Meier curves for each subtype plotKM(pred = prediction, time = DFS.month, event = DFS.status)