setupHIZE {TFutils}R Documentation

process a gene_attribute_matrix.txt file from harmonizeome into a GeneSetCollection

Description

process a gene_attribute_matrix.txt file from harmonizeome into a GeneSetCollection

Usage

setupHIZE(txtfn = "gene_attribute_matrix.txt", tag)

Arguments

txtfn

character(1) path to gene_attribute_matrix.txt file from harmonizeome

tag

character(1) will be added to shortDescription field of each GeneSet instance

Note

After uncompressing content of http://amp.pharm.mssm.edu/static/hdfs/harmonizome/data/cheappi/gene_attribute_matrix.txt.gz run this on gene_attribute_matrix.txt with tag="CHEA".


[Package TFutils version 1.4.0 Index]