calConservation-methods {TFBSTools} | R Documentation |
Calculate the conservation score for a pairwise alignment given a smooth window size.
calConservation(aln1, aln2, windowSize=51L, which="1")
aln1 |
A |
aln2 |
A |
windowSize |
The size of the sliding window (in nucleotides) for calculating local conservation in the alignment. This should be an odd value. |
which |
The conservation profile of Which sequence in the alignments is computed. It can be "1" or "2". |
A numeric
vector with the same length of alignment is returned.
Ge Tan