performanceMetrics {SummarizedBenchmark}R Documentation

Accessor and replacement functions for the slot 'performanceMetrics' of a SummarizedBenchmark object.

Description

Accessor and replacement functions for the slot 'performanceMetrics' of a SummarizedBenchmark object.

Usage

performanceMetrics(object, ...)

performanceMetrics(object, ...) <- value

## S4 method for signature 'SummarizedBenchmark'
performanceMetrics(object, assay = NULL)


  ## S4 replacement method for signature 'SummarizedBenchmark,SimpleList'
performanceMetrics(object) <- value

Arguments

object

a SummarizedBenchmark object.

...

Futher arguments, perhaps used by methods

value

A SimpleList of the same length as the number of assays

assay

A character string indicating an assay name

Value

A SimpleList with one element for each assay. Each element of the list contains a list of performance functions.

Author(s)

Alejandro Reyes

See Also

addPerformanceMetric, estimatePerformanceMetrics

Examples


data( sb )
performanceMetrics( sb )
performanceMetrics( sb, assay="qvalue" )
performanceMetrics( sb ) <- SimpleList( qvalue=list(), logFC=list() )


[Package SummarizedBenchmark version 2.2.3 Index]