markerQualityControl {SubCellBarCode}R Documentation

Evaluate the quality of the marker proteins

Description

Given the proteomics data, quality of the overlapped marker proteins are evaluated by correlating replicates of fractions.

Usage

markerQualityControl(coveredProteins, protein.data)

Arguments

coveredProteins

character; list of marker proteins, gene symbols, that are covered in 3365 marker proteins.

protein.data

data.frame; fractionated proteomics data, rownames are gene symbols associated protein.

Value

robustMarkers

Examples

{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])

r.markers <- markerQualityControl(c.prots[1:5], df)
}

[Package SubCellBarCode version 1.0.0 Index]