Structstrings-internals {Structstrings} | R Documentation |
Analog to Biostrings
there are a few objects, which should only be
used internally, but may be of use to other package developers.
Otherwise take care.
DOTBRACKET_CHAR_VALUES DOTBRACKET_ALPHABET STRUCTURE_NEUTRAL_CHR STRUCTURE_OPEN_CHR STRUCTURE_CLOSE_CHR ## S4 replacement method for signature 'DotBracketDataFrame' x[i, j, ...] <- value ## S4 replacement method for signature 'CompressedSplitDotBracketDataFrameList' colnames(x) <- value
x, i, j, ..., value |
See DataFrame. |
An object of class integer
of length 9.
DOTBRACKET_CHAR_VALUES DOTBRACKET_ALPHABET STRUCTURE_NEUTRAL_CHR STRUCTURE_OPEN_CHR STRUCTURE_CLOSE_CHR # the replace method for a DotBracketDataFrame had to be reimplemented # because of the requirement of columns for a DotBracketDataFrameList and # DotBracketDataFrame data("dbs", package = "Structstrings", envir = environment()) dbdfl <- getBasePairing(dbs) # Elements are returned as DotBracketDataFrames dbdf <- dbdfl[[1]] dbdfl[[1]] <- dbdf dbdfl[1] <- dbdfl[1]