GE_matrix_mean {StarBioTrek} | R Documentation |
GE_matrix creates a matrix of mean gene expression levels for pathways given by the user.
GE_matrix_mean(DataMatrix, genes.by.pathway)
DataMatrix |
gene expression matrix (eg.TCGA data) |
genes.by.pathway |
list of pathway data as provided by getKEGGdata |
a matrix for each pathway (mean gene expression level belong to that pathway)
list_path_plot<-GE_matrix_mean(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])