signatures.plot {SparseSignatures}R Documentation

signatures.plot

Description

Plot the discovered signatures.

Usage

signatures.plot(beta, useColNames = TRUE, mutation_categories = NULL,
  firstBackground = TRUE, xlabels = TRUE)

Arguments

beta

discovered signatures

useColNames

boolean value; shall I use the colnames from beta as names for the signatures?

mutation_categories

if useColNames is FALSE, the trinucleotides categories to be considered can be specified. An example is provided in the package and can be loaded by data(mutation_categories)

firstBackground

boolean value; shall I display the background signature as the first element?

xlabels

boolean value; shall I display x labels?

Value

A ggplot2 object

Examples

data(nmf_LassoK_example)
beta = as.beta(nmf_LassoK_example)
signatures.plot(beta=beta)


[Package SparseSignatures version 1.4.0 Index]