seqMissing {SeqArray} | R Documentation |
Calculates the missing rates per variant or per sample.
seqMissing(gdsfile, per.variant=TRUE, .progress=FALSE, parallel=seqGetParallel())
gdsfile |
a |
per.variant |
missing rate per variant if |
.progress |
if TRUE, show progress information |
parallel |
|
A vector of missing rates.
Xiuwen Zheng
seqAlleleFreq
, seqNumAllele
,
seqParallel
, seqGetParallel
# the GDS file (gds.fn <- seqExampleFileName("gds")) # display (f <- seqOpen(gds.fn)) summary(seqMissing(f, TRUE, .progress=TRUE)) summary(seqMissing(f, FALSE, .progress=TRUE)) # close the GDS file seqClose(f)