ppie.compPij {STRINGdb} | R Documentation |
Compute the pvalue of protein I to interact with protein J (look at the Pradines paper referenced below)
ppie.compPij(degI, degJ, edgeNum)
degI |
degree of protein I |
degJ |
degree of protein J |
edgeNum |
total number of edges of the entire graph |
return the pvalue of protein I to interact with protein J (look at the Pradines paper referenced below)
Andrea Franceschini
Pradines JR, Farutin V, Rowley S, Dancik V. Analyzing protein lists with large networks: edge-count probabilities in random graphs with given expected degrees. J. Comput. Biol. 2005;12:113-128. Franceschini, A et al. (2013). STRING v9.1: protein-protein interaction networks, with increased coverage and integration. In:Nucleic Acids Res. 2013 Jan;41(Database issue)