get.probeset {RPA} | R Documentation |
Get probeset matrix.
get.probeset(name, level, taxonomy, probedata, log10 = TRUE)
name |
name |
level |
taxonomic level |
taxonomy |
taxonomy |
probedata |
oligos vs. samples preprocessed data matrix; absolute scale |
log10 |
Logical. Logarithmize the data TRUE/FALSE |
probeset data matrix
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation('microbiome')
#taxonomy <- GetPhylogeny('HITChip', 'filtered') #data.dir <- system.file("extdata", package = "microbiome") #probedata <- read_hitchip(data.dir, "rpa")$probedata #ps <- get.probeset('Akkermansia', 'L2', taxonomy, probedata)