print.rjmcmcNucleosomesBeforeAndAfterPostTreatment {RJMCMCNucleosomes} | R Documentation |
Generated a formated output of a list marked as
an rjmcmcNucleosomesBeforeAndAfterPostTreatment
class
## S3 method for class 'rjmcmcNucleosomesBeforeAndAfterPostTreatment' print(x, ...)
x |
the output object from |
... |
arguments passed to or from other methods |
an object of class
rjmcmcNucleosomesBeforeAndAfterPostTreatment
Astrid Deschenes
## Load synthetic dataset of reads data(syntheticNucleosomeReads) ## Use dataset of reads to create GRanges object sampleGRanges <- GRanges(syntheticNucleosomeReads$dataIP) ## Run nucleosome detection on the entire sample ## Not run: result <- rjmcmcCHR(reads = sampleGRanges, zeta = 147, delta=50, maxLength=1200, nbrIterations = 1000, lambda = 3, kMax = 30, minInterval = 146, maxInterval = 292, minReads = 5, vSeed = 10113, nbCores = 2, saveAsRDS = FALSE) ## End(Not run) ## Print result ## Not run: print(result)