load_LD {PAST} | R Documentation |
Load Linkage Disequilibrium
load_LD(LD_file, LD_columns = c("Locus1", "Position1", "Site1", "Position2", "Site2", "Dist_bp", "R.2"))
LD_file |
The file containing linkage disequilibrium data |
LD_columns |
The names of the columns in your linkage disequilibrium data for the chromosome of the first SNP, the position of the first SNP, the site of the first SNP, the chromosome of the second SNP, the position of the second SNP, the site of the second SNP, the distance between the two SNPs, and the R.2 |
The linkage disequilibrium data in a list containing dataframes for each chromosome.
demo_LD_file = system.file("extdata","LD.txt.xz", package = "PAST", mustWork = TRUE) LD <- load_LD(demo_LD_file)