filterconcepts {Onassis} | R Documentation |
filterconcepts
This method filters unwanted concepts from the entities of an Onassis-class
object
filterconcepts(onassis, concepts_to_filter) ## S4 method for signature 'Onassis' filterconcepts(onassis, concepts_to_filter = c())
onassis |
An object of class |
concepts_to_filter |
A vector with unwanted concepts |
the instance of Onassis-class
with filtered entities
geo_chip <- readRDS(system.file('extdata', 'vignette_data', 'GEO_human_chip.rds', package='Onassis')) geo_chip <- geo_chip[sample(nrow(geo_chip), 15) ,] obo <- system.file('extdata', 'sample.cs.obo', package='OnassisJavaLibs') onassis_results <- annotate(geo_chip, 'OBO', dictionary=obo) filtered_onassis <- filterconcepts(onassis_results, c('cell'))