MAP2 {MinimumDistance} | R Documentation |
Computes maximum a posteriori estimate for the trio copy number state
MAP2(object, mdgr, param = MinDistParam(), ...) ## S4 method for signature 'MinDistExperiment,MinDistGRanges' MAP2(object, mdgr, param = MinDistParam(), ...) ## S4 method for signature 'MinDistExperiment,GRangesList' MAP2(object, mdgr, param = MinDistParam(), ...) ## S4 method for signature 'MinDistExperiment,GRanges' MAP2(object, mdgr, param = MinDistParam(), ...)
object |
An object of class |
mdgr |
An object of class |
param |
An object of class |
... |
ignored |
An object of class MinDistPosterior
library(oligoClasses) library(VanillaICE) ## A MinDistExperiment object: data(md_exp) ## Segmented data data(md_gr) e_param <- EmissionParam(temper=1, p_outlier=1/100) param <- MinDistParam(thin=1L, emission=e_param) ## Not run: md_g <- MAP2(md_exp, md_gr, param) ## End(Not run)