filterExperiment {MinimumDistance}R Documentation

Methods for filtering MinDistExperiment objects

Description

Filter a MinDistExperiment object to exclude markers with missing values in the low-level summaries, exclude markers that lie in segments (granges argument) with small minimum distance values (unlikely to be de novo)

Usage

filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,GRanges'
filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,GRangesList'
filterExperiment(object, granges,
  param)

## S4 method for signature 'MinDistExperiment,MinDistGRanges'
filterExperiment(object, granges,
  param)

Arguments

object

A MinDistExperiment

granges

A GRanges, GRangesList, or MinDistGRanges object

param

a MinDistParam object

Value

a MinDistExperiment


[Package MinimumDistance version 1.28.0 Index]