printInformationSelect {MetCirc} | R Documentation |
Displays information on connected features of selected features.
printInformationSelect(groupname, msp = NULL, ind, lMatInd, linkMatrixThreshold, similarityMatrix, roundDigits = 2)
groupname |
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msp |
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ind |
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lMatInd |
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linkMatrixThreshold |
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similarityMatrix |
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roundDigits |
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printInformationSelect
is for internal use.
character
that is in HTML format
Thomas Naake, thomasnaake@googlemail.com
data("idMSMStoMSP", package = "MetCirc") data("binnedMSP", package = "MetCirc") ## use only a selection binnedMSP <- binnedMSP[c(1:20, 29:48, 113:132, 240:259),] similarityMat <- createSimilarityMatrix(binnedMSP) groupname <- rownames(similarityMat) ## order similarityMat according to mz simMat <- createOrderedSimMat(similarityMat, order = "mz") groupnameMZ <- rownames(simMat) linkMat_thr <- createLinkMatrix(simMat, 0.8, 1) ind <- 2 indMZ <- which(groupname[ind] == truncateName(groupnameMZ, NULL, group = TRUE)) linkMatInds <- getLinkMatrixIndices(groupnameMZ[indMZ], linkMat_thr) MetCirc:::printInformationSelect(groupname = groupname, msp = NULL, ind = ind, lMatInd = linkMatInds, linkMatrixThreshold = linkMat_thr, similarityMatrix = similarityMat, roundDigits = 2)