NMImatrix {MODA} | R Documentation |
Compare the background network and a set of condition-specific network. returning a pair-wise matrix to show the normalized mutual information between each pair of networks in terms of partitioning
NMImatrix(ResultFolder, intModules, indicator, intconditionModules, conditionNames, Nsize, legendNames = NULL, plt = FALSE)
ResultFolder |
where to store results |
intModules |
how many modules in the background network |
indicator |
identifier of current profile, served as a tag in name |
intconditionModules |
a numeric vector, each of them is the number of modules in each condition-specific network. Or just single number |
conditionNames |
a character vector, each of them is the name of condition. Or just single name |
Nsize |
The number of genes in total |
legendNames |
a character vector, each of them is the condition name showing up in the similarity matrix plot if applicable |
plt |
a boolean value to indicate whether plot the similarity matrix |
NMI matrix indicating the similarity between each two networks
Dong Li, dxl466@cs.bham.ac.uk