cData {MAST} | R Documentation |
These functions are now all deprecated and will be removed in a future release.
cData(sc) cData(sc) <- value ## S4 method for signature 'SingleCellAssay' cData(sc) ## S4 replacement method for signature 'SingleCellAssay' cData(sc) <- value ## S4 method for signature 'SingleCellAssay,SingleCellAssay' combine(x, y, ...) ## S4 method for signature 'SingleCellAssay,ANY' combine(x, y, ...)
sc |
An object with |
value |
replacement value |
x |
|
y |
|
... |
|
cData(sc)
: Return the cellData
data.frame
.
cData(sc)<-value
: Replace the cellData with value
, which can be either an AnnotatedDataFrame
or data.frame
. The replacement is checked that it has mandatory fields defined by its class.
combine(x, y, ...)
: Concatenate two experiments along rows/columns
DataFrame
or modifies the SingleCellAssay
object in place
You should transition to use the following replacements:
exprs
data(vbetaFA) stopifnot(all.equal(hushWarning(cData(vbetaFA), 'deprecated'),colData(vbetaFA))) stopifnot(all.equal(hushWarning(fData(vbetaFA), 'deprecated'), mcols(vbetaFA))) stopifnot(all.equal(hushWarning(exprs(vbetaFA), 'deprecated'), t(assay(vbetaFA))))