getOrg {MAGeCKFlute} | R Documentation |
Determine the gene annotation package. for specific organism
getOrg(organism, update = FALSE)
organism |
Character, KEGG species code, or the common species name, used to determine the gene annotation package. For all potential values check: data(bods); bods. Default org="hsa", and can also be "human" (case insensitive). |
update |
Boolean, indicating whether download recent annotation from NCBI. |
A list containing three elements:
organism |
species |
pkg
annotation package name
Symbol_Entrez
a data frame, mapping between gene symbol and entrez id
Wubing Zhang
ann = getOrg("human") print(ann$pkg)