TransGeneID {MAGeCKFlute} | R Documentation |
Gene ID conversion between ENTREZID and SYMBOL
TransGeneID(genes, fromType = "Symbol", toType = "Entrez", organism = "hsa", useBiomart = FALSE, ensemblHost = "www.ensembl.org")
genes |
A character vector, input genes to be converted. |
fromType |
The input ID type, one of "Symbol" (default), "Entrez" and "Ensembl"; you can also input other valid attribute names for biomaRt. |
toType |
The output ID type, one of "Symbol", "Entrez" (default), "Ensembl"; you can also input other valid attribute names for biomaRt. |
organism |
One of "hsa"(or 'Human'), "mmu"(or 'Mouse'), "bta", "cfa", "ptr", "rno", and "ssc". |
useBiomart |
Boolean, indicating whether use Biomart to do the transformation. |
ensemblHost |
String, specifying ensembl host, you can use 'listEnsemblArchives()' to show all available Ensembl archives hosts. |
A character vector, named by unique input gene ids.
Wubing Zhang
data(mle.gene_summary) TransGeneID(mle.gene_summary$Gene[1:10], organism="hsa")