plotGene {INSPEcT} | R Documentation |
A method to see the shapes of the estimated synthesis, degradation and processing rates, pre-RNA and total RNA concentrations (solid thin lines) their variances (dashed lines) and the modeled rates and concentrations (ticker solid line) of a single gene.
plotGene(object, ix, fix.yaxis = FALSE, priors = TRUE) ## S4 method for signature 'INSPEcT' plotGene(object, ix, fix.yaxis = FALSE, priors = TRUE)
object |
An object of class INSPEcT |
ix |
Eiher a rowname or a row number to select one single gene |
fix.yaxis |
A logical, indicating whether the limits for y-axis of degradation and processing rates should be fixed relative to their distributions |
priors |
A logical, if true the priors of the rates are plotted |
A list containing total RNA levels and their confidence interval (levels plus and minus one standard deviation), pre-RNA lelevs and their confidence intervals, synthsis rates and their confidence intervals, degradation rates and processing rates of the selected gene.
nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds')) plotGene(nascentInspObj10, 1)