Brick_get_bintable {HiCBricks}R Documentation

Returns the binning table associated to the Hi-C experiment.

Description

Brick_get_bintable makes a call to Brick_get_ranges to retrieve the binning table of the associated Brick store. This is equivalent to passing the argument rangekey = "bintable" in Brick_get_ranges

Usage

Brick_get_bintable(Brick, chr = NULL)

Arguments

Brick

Required. A string specifying the path to the Brick store created with CreateBrick.

chr

Optional. A chr string specifying the chromosome to select from the ranges.

Value

Returns a GRanges object containing the binning table associated to the Brick store.

See Also

Brick_get_ranges

Examples


Brick.file <- system.file("extdata", "test.hdf", package = "HiCBricks")
Brick_get_bintable(Brick = Brick.file)


[Package HiCBricks version 1.2.0 Index]