Brick_list_matrices {HiCBricks} | R Documentation |
Brick_list_matrices
will list all chromosomal pair matrices from the
Brick store, with their associated filename, value range, done status
and sparse
Brick_list_matrices(Brick)
Brick |
Required. A string specifying the path to the Brick store created with CreateBrick. |
Returns a data.frame object with columns chr1, chr2 corresponding to chromosome pairs, and the associated attributes. filename corresponds to the name of the file that was loaded for the pair. min and max specify the minimum and maximum values in the matrix, done is a logical value specifying if a matrix has been loaded and sparsity specifies if a matrix is defined as a sparse matrix.
Brick.file <- system.file("extdata", "test.hdf", package = "HiCBricks") Brick_list_matrices(Brick = Brick.file)