Brick_get_bintable {HiCBricks} | R Documentation |
Brick_get_bintable
makes a call to Brick_get_ranges
to
retrieve the binning table of the associated Brick store. This is equivalent
to passing the argument rangekey = "bintable" in
Brick_get_ranges
Brick_get_bintable(Brick, chr = NULL)
Brick |
Required. A string specifying the path to the Brick store created with CreateBrick. |
chr |
Optional. A chr string specifying the chromosome to select from the ranges. |
Returns a GRanges object containing the binning table associated to the Brick store.
Brick_get_ranges
Brick.file <- system.file("extdata", "test.hdf", package = "HiCBricks") Brick_get_bintable(Brick = Brick.file)