Brick_mcool_normalisation_exists {HiCBricks} | R Documentation |
Brick_mcool_normalisation_exists
checks if a particular normalisation
exists in an mcool file.
Brick_mcool_normalisation_exists(mcool, norm.factor = NULL, binsize = NULL)
mcool |
Required. Path to an mcool file. |
norm.factor |
Required. The normalization factor to use for normalization from an mcool file. norm.factor currently accepts one of "Iterative-Correction", "Knight-Ruitz", "Vanilla-coverage", "Vanilla-coverage-square-root". |
binsize |
Optional. The binsize to select from an mcool file. |
A boolean vector of length 1
## Not run: require(curl) curl_download(url = paste("https://data.4dnucleome.org/" "files-processed/4DNFI7JNCNFB/" "@download/4DNFI7JNCNFB.mcool",sep = ""), destfile = "./H1-hESC-HiC-4DNFI7JNCNFB.mcool") mcool <- "./H1-hESC-HiC-4DNFI7JNCNFB.mcool" Brick_mcool_normalisation_exists(mcool = mcool, norm.factor = "Iterative-Correction", binsize = 10000) ## End(Not run)