example.data {GeneNetworkBuilder} | R Documentation |
example.data is a data list of example datasets. There is a dataset example.microarrayData, which is the example of gene expression data of a gene-chip result of C.elegans. Dataset example.data$ce.bind is a TF binding matrix of ChIP-chip experiment of C.elegans. Dataset example.data$cd.exprData is expression data of a gene-chip result of C.elegans. Dataset example.data$hs.bind is a TF binding matrix of ChIP-chip experiment of H.sapiens. Dataset example.data$hs.exprData is expression data of a combination of a gene-chip result and a RNA-SEQ result of H.sapiens.
example.data
dataframe
The dataset example.microarrayData contains columns: ID, logFC, AveExpr, t, P.Value, adj.P.Val, B, genes and symbols. The columns of ID, logFC and symbols are required by GeneNetworkBuilder. The dataset example.data$hs.bind contains columns: ID, symbols, logFC and P.Value. The dataset example.data$hs.exprData contains columns: from and to.
data(example.data) names(example.data) head(example.data$example.microarrayData) head(example.data$ce.bind) head(example.data$ce.exprData) head(example.data$hs.bind) head(example.data$hs.exprData)