gdcRNADownload {GDCRNATools} | R Documentation |
Download gene expression quantification and isoform expression quantification data from GDC either by providing the manifest file or by sepcifying the project id and data type
gdcRNADownload(manifest = NULL, project.id, data.type, directory = "Data", write.manifest = FALSE, method = "gdc-client")
manifest |
menifest file that is downloaded from the GDC cart.
If provided, files whose UUIDs are in the manifest file
will be downloaded via gdc-client, otherwise, |
project.id |
project id in GDC |
data.type |
one of |
directory |
the folder to save downloaded files.
Default is |
write.manifest |
logical, whether to write out the manifest file |
method |
method that is used to download data. Either
|
Downloaded files in the specified directory
Ruidong Li and Han Qu
####### Download RNA data by menifest file ####### manifest <- 'RNAseq.manifest.txt' ## Not run: gdcRNADownload(manifest=manifest) ####### Download RNA data by project id and data type ####### project <- 'TCGA-PRAD' ## Not run: gdcRNADownload(project.id=project, data.type='RNAseq')