getPwmFromFastaFile {DiffLogo} | R Documentation |
generates a pwm from a FASTA file
getPwmFromFastaFile(filename, alphabet = NULL)
filename |
the FASTA file |
alphabet |
the desired alphabet of type Alphabet |
a pwm
fileName = "extdata/alignments/F-box_bacteria.seq.fa" file = system.file(fileName, package = "DiffLogo") pwm = getPwmFromFastaFile(file)