deepblue_select_regions {DeepBlueR} | R Documentation |
Selects Experiment regions that matches the criteria informed by the operation parameters.
deepblue_select_regions(experiment_name = NULL, genome = NULL, epigenetic_mark = NULL, sample_id = NULL, technique = NULL, project = NULL, chromosomes = NULL, start = NULL, end = NULL, user_key = deepblue_options("user_key"))
experiment_name |
- A string or a vector of string (name(s) of selected experiment(s)) |
genome |
- A string or a vector of string (the target genome) |
epigenetic_mark |
- A string or a vector of string (name(s) of selected epigenetic mark(s)) |
sample_id |
- A string or a vector of string (id(s) of selected sample(s)) |
technique |
- A string or a vector of string (name(s) of selected technique(es)) |
project |
- A string or a vector of string (name(s) of selected projects) |
chromosomes |
- A string or a vector of string (chromosome name(s)) |
start |
- A int (minimum start region) |
end |
- A int (maximum end region) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_tiling_regions
deepblue_select_regions( genome="hg19", epigenetic_mark = "H3K27ac", project = " BLUEPRINT Epigenome")