plot.doqtl {DOQTL} | R Documentation |
Given a genome scan produced by scanone, create a plot of the LOD score across all chromosomes.
## S3 method for class 'doqtl' plot(x, stat.name = c("lod", "neg.log10.p"), sig.thr = NULL, sig.col = "red", ...)
x |
DOQTL object containing the LOD score and model coefficients. |
stat.name |
Character string containing the name of the mapping statistic. |
sig.thr |
Numeric matrix containing significance thresholds. Columns must be
labelled "A" and "X", in that order and should contain thresholed
produced by |
sig.col |
Colors to use when plotting the significance thresholds above. Must be the same length as the nuber of rows in sig.thr. |
... |
Additional arguments to pass to plot. |
Creates a QTL plot.
Daniel Gatti
## Not run: qtl = scanone(pheno = pheno, pheno.col = 1, probs = probs, snps = snps) plot(qtl) ## End(Not run)