plotSignificance {DChIPRep} | R Documentation |
This function plots the positionwise mean of the two conditions after
runTesting
has been run on a DChIPRepResults
object. The points corresponding
to significant
positions are colored black in both of the conditions.
The function returns the plot as a ggplot2
object that can be modified afterwards.
## S4 method for signature 'DChIPRepResults' plotSignificance(object, meanFunction = robust_mean, lfdrThresh = 0.2, ...)
object |
a |
meanFunction |
a function to compute the positionwise mean per group, defaults to a Huber estimator of the mean. |
lfdrThresh |
Threshold for the local FDR |
... |
additional parameters for plotting (NOT YET IMPLEMENTED) |
a ggplot2
object
data(testData) dcr <- DChIPRepResults(testData) dcr <- runTesting(dcr) plotSignificance(dcr)