GatingSet,character,character-method {CytoML}R Documentation

constructors for GatingSet

Description

construct object from xml workspace file and a list of sampleIDs (not intended to be called by user.)

Usage

## S4 method for signature 'character,character'
GatingSet(x, y, guids,
  includeGates = FALSE, sampNloc = "keyword", xmlParserOption, wsType)

Arguments

x

character or flowSet or GatingHierarchy

y

character ormissing

guids

character vectors to uniquely identify each sample (Sometime FCS file names alone may not be unique)

includeGates

logical whether to parse the gates or just simply extract the flowJo stats

sampNloc

character scalar indicating where to get sampleName(or FCS filename) within xml workspace. It is either from "keyword" or "sampleNode".

xmlParserOption

integer option passed to xmlTreeParse

wsType

character workspace type, can be value of "win", "macII", "vX", "macIII".


[Package CytoML version 1.10.0 Index]