getBindCor {ChIPseqR} | R Documentation |
This function calculates the cross-correlation between read counts on forward and reverse strand.
getBindCor(data, max.lag, summary, plot = TRUE, ...)
data |
An object of class |
max.lag |
Maximum lag to use in cross-correlation calculation. |
summary |
Function to use to summarise cross-correlation across chromosomes. |
plot |
Logical indicating whether to plot cross-correlation. |
... |
Further arguments, currently ignored. |
Function fttcor
in package “timsac” is used to carry out the computation.
The (summarised) cross-correlation. If summary
is missing a list of cross-correlations for
each chromosome is returned.
Peter Humburg
fftcor
, ReadCounts
, getBindLen