seq2gene {ChIPseeker}R Documentation

seq2gene

Description

annotate genomic regions to genes in many-to-many mapping

Usage

seq2gene(seq, tssRegion, flankDistance, TxDb, sameStrand = FALSE)

Arguments

seq

genomic regions in GRanges object

tssRegion

TSS region

flankDistance

flanking search radius

TxDb

TranscriptDb object

sameStrand

logical whether find nearest/overlap gene in the same strand

Value

gene vector

Author(s)

Guangchuang Yu


[Package ChIPseeker version 1.20.0 Index]