enrichAnnoOverlap {ChIPseeker}R Documentation

enrichAnnoOverlap

Description

calcuate overlap significant of ChIP experiments based on their nearest gene annotation

Usage

enrichAnnoOverlap(queryPeak, targetPeak, TxDb = NULL,
  pAdjustMethod = "BH", chainFile = NULL,
  distanceToTSS_cutoff = NULL)

Arguments

queryPeak

query bed file

targetPeak

target bed file(s) or folder containing bed files

TxDb

TxDb

pAdjustMethod

pvalue adjustment method

chainFile

chain file for liftOver

distanceToTSS_cutoff

restrict nearest gene annotation by distance cutoff

Value

data.frame

Author(s)

G Yu


[Package ChIPseeker version 1.20.0 Index]