runRankHypothesis {CausalR} | R Documentation |
A top level function that used to run CausalR
runRankHypothesis(PPInet, Expressiondata, delta, correctPredictionsThreshold)
PPInet |
PPInet is the PPI interaction file |
Expressiondata |
observed gene expression data |
delta |
the number of links to follow from any hypothesis no. Dedepending on network size/topology, this value typically ranges between 1 and 5 |
correctPredictionsThreshold |
Minimal score for p-values calculation. Hypotheses with scores below this value will get NAs for p-value and enrichment p-value. The usual default is -inf within the RankTheHypotheses function, where it is employed. |
rankedHypothesis table of results produced by the algorithm