brcaMCoord1 {COCOA}R Documentation

A data.frame object with coordinates for cytosines from chr1 included in the PCA.

Description

Corresponds to the rows of brcaLoadings1 and brcaMethylData1. DNA methlyation data is Illumina 450k microarray data from breast cancer patients from The Cancer Genome Atlas (TCGA-BRCA, https://portal.gdc.cancer.gov/). Coordinates correspond to the hg38 genome version. Only cytosines on chr1 are included to keep the example data small.

Usage

data(brcaMCoord1)

Format

A data.frame object


[Package COCOA version 1.2.0 Index]