NormalizeCounts {CNVPanelizer}R Documentation

NormalizeCounts

Description

This function normalize counts use of Total sum scaling or NOISeq::tmm to normalize the read counts

Usage

    NormalizeCounts(allCounts,
                    method)

Arguments

allCounts

Matrix or vector with sample read counts (rows: amplicons, columns: samples)

method

either "tmm" (trimmed mean of m values) or "tss"(total sum scaling)

Value

A matrice

samples

The samples matrix normalized

Author(s)

Cristiano Oliveira, Thomas Wolf

Examples

data(sampleReadCounts)

normalizedReadCounts <- NormalizeCounts(sampleReadCounts)

[Package CNVPanelizer version 1.16.0 Index]