SelectReferenceSetByInterquartileRange {CNVPanelizer} | R Documentation |
Select a reference set using a factor of the Interquartile Range
SelectReferenceSetByInterquartileRange(allSamplesReadCounts, normalizationMethod = "tmm", iqrFactor = 1)
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
iqrFactor |
Interquantile range factor |
Returns a list of sample identifiers to be used as reference
Cristiano Oliveira
SelectReferenceSetByPercentil(allSamplesReadCounts, normalizationMethod = "tmm", iqrFactor = 1)