SelectReferenceSetByPercentil {CNVPanelizer} | R Documentation |
Select a reference set using percentiles
SelectReferenceSetByPercentil(allSamplesReadCounts, normalizationMethod = "tmm", lowerBoundPercentage = 1, upperBoundPercentage = 99)
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
lowerBoundPercentage |
Lower bound percentage |
upperBoundPercentage |
Upper bound percentage |
Returns a list of sample identifiers to be used as reference
Cristiano Oliveira
SelectReferenceSetByPercentil(allSamplesReadCounts, normalizationMethod = "tmm", lowerBoundPercentage = 1, upperBoundPercentage = 99)