old_boxplot_cluster_gex {BPRMeth} | R Documentation |
(DEPRECATED) boxplot_cluster_gex
creates a boxplot of
clustered gene expression levels which depend on the clustered methylation
profiles. Each colour denotes a different cluster.
old_boxplot_cluster_gex(bpr_cluster_obj, gex, main_lab = "Gene expression levels")
bpr_cluster_obj |
The output of the |
gex |
The vector of gene expression data for each promoter region. |
main_lab |
The title of the plot |
The figure to be plotted in the device.
C.A.Kapourani C.A.Kapourani@ed.ac.uk
old_plot_cluster_prof
,
old_plot_fitted_profiles
# Cluster methylation profiles using 4 RBFs obs <- meth_data basis <- create_rbf_object(M = 4) res <- bpr_cluster_wrap(x = obs, K = 3, em_max_iter = 2, opt_itnmax = 3, init_opt_itnmax = 2, is_parallel = FALSE) # Create the plot old_boxplot_cluster_gex(bpr_cluster_obj = res, gex = gex_data)