agep {wateRmelon} | R Documentation |
Predict age of samples using Horvath's Coefficients
agep(betas, coeff=NULL, method=c('horvath','hannum') ,...)
betas |
Matrix of betas or MethyLumiSet or MethylSet object. |
coeff |
If NULL, will default to Horvath's coefficients. Otherwise can be supplied with vector of own coefficients with an intercept as first element. |
method |
currently either 'horvath' or 'hannum'. If using 'hannum' remember to call data(hannumCoef) before analysis and supply coeff with the hannum coefficients, otherwise will default to horvath. |
... |
To pass to arguments to downstream functions to specify adult.age |
Returns matrix of predicted ages per sample.
Original Functions: Steve Horvath
wateRmelon Implementation: Leo Schalkwyk, Louis El Khoury
Horvath S: DNA methylation age of human tissues and cell types. Genome Biology 2013, 14:R115
data(melon) agep(melon,coeff=NULL) # or agep(betas(melon),coeff=NULL)