read_uniprobe {universalmotif}R Documentation

Import UNIPROBE motifs.

Description

Import UNIPROBE formatted motifs. Assumed DNA.

Usage

read_uniprobe(file, skip = 0)

Arguments

file

character(1) File name.

skip

numeric(1) If not zero, will skip however many desired lines in the file before starting to read.

Value

list universalmotif objects.

Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

References

Hume M, Barrera L, Gisselbrecht S, Bulyk M (2015). “UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.” Nucleic Acids Research, 43, D117-D122.

See Also

Other read_motifs: read_cisbp, read_homer, read_jaspar, read_matrix, read_meme, read_motifs, read_transfac

Examples

uniprobe.minimal <- read_uniprobe(system.file("extdata", "uniprobe_minimal.txt",
                                              package = "universalmotif"))
uniprobe.full <- read_uniprobe(system.file("extdata", "uniprobe_full.txt",
                                           package = "universalmotif"))


[Package universalmotif version 1.2.0 Index]