read_uniprobe {universalmotif} | R Documentation |
Import UNIPROBE formatted motifs. Assumed DNA.
read_uniprobe(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Hume M, Barrera L, Gisselbrecht S, Bulyk M (2015). “UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.” Nucleic Acids Research, 43, D117-D122.
Other read_motifs: read_cisbp
,
read_homer
, read_jaspar
,
read_matrix
, read_meme
,
read_motifs
, read_transfac
uniprobe.minimal <- read_uniprobe(system.file("extdata", "uniprobe_minimal.txt", package = "universalmotif")) uniprobe.full <- read_uniprobe(system.file("extdata", "uniprobe_full.txt", package = "universalmotif"))