phyPML {treeio} | R Documentation |
tree annotation of sequence substitution by comparing to parent node
phyPML(pmlTree, type = "ml")
pmlTree |
tree in pml object, output of phangorn::optim.pml |
type |
one of 'ml' and 'bayes' for inferring ancestral sequences |
phangorn object
Yu Guangchuang