SpectrumScore-class {transite} | R Documentation |
An S4 class to represent a scored spectrum
Getter Method spectrumAdjRSquared
Getter Method spectrumDegree
Getter Method spectrumResiduals
Getter Method spectrumSlope
Getter Method spectrumFStatistic
Getter Method spectrumFStatisticPValue
Getter Method spectrumConsistencyScore
Getter Method spectrumConsistencyScorePValue
Getter Method spectrumConsistencyScoreN
spectrumAdjRSquared(object) ## S4 method for signature 'SpectrumScore' spectrumAdjRSquared(object) spectrumDegree(object) ## S4 method for signature 'SpectrumScore' spectrumDegree(object) spectrumResiduals(object) ## S4 method for signature 'SpectrumScore' spectrumResiduals(object) spectrumSlope(object) ## S4 method for signature 'SpectrumScore' spectrumSlope(object) spectrumFStatistic(object) ## S4 method for signature 'SpectrumScore' spectrumFStatistic(object) spectrumFStatisticPValue(object) ## S4 method for signature 'SpectrumScore' spectrumFStatisticPValue(object) spectrumConsistencyScore(object) ## S4 method for signature 'SpectrumScore' spectrumConsistencyScore(object) spectrumConsistencyScorePValue(object) ## S4 method for signature 'SpectrumScore' spectrumConsistencyScorePValue(object) spectrumConsistencyScoreN(object) ## S4 method for signature 'SpectrumScore' spectrumConsistencyScoreN(object) ## S4 method for signature 'SpectrumScore' show(object) ## S4 method for signature 'SpectrumScore,ANY' plot(x)
object |
SpectrumScore object |
x |
SpectrumScore object |
Object of type SpectrumScore
adj.r.squared
adjusted R^2 of polynomial model
degree
degree of polynomial (integer between 0 and 5)
residuals
residuals of the polynomial model
slope
coefficient of the linear term of the polynomial model (spectrum "direction")
f.statistic
F statistic from the F test used to determine the degree of the polynomial model
f.statistic.p.value
p-value associated with the F statistic
consistency.score
raw local consistency score of the spectrum
consistency.score.p.value
p-value associated with the local consistency score
consistency.score.n
number of permutations performed to calculate p-value of local consistency score (permutations performed before early stopping criterion reached)
plot
spectrum plot
new("SpectrumScore", adj.r.squared = 0, degree = 0L, residuals = 0, slope = 0, f.statistic = 0, f.statistic.p.value = 1, consistency.score = 1, consistency.score.p.value = 1, consistency.score.n = 1000L, plot = NULL )