kmers.enrichment {transite}R Documentation

Example k-mer Enrichment Data

Description

This data frame with k-mer enrichment data (as produced by runKmerTSMA) is used in a code example for k-mer volcano plot function drawVolcanoPlot.

Usage

kmers.enrichment

Format

A data frame with the following columns:

kmer contains all hexamers (AAAAAA to UUUUUU)
foreground.count absolute k-mer frequency in foreground set
background.count absolute k-mer frequency in background set
enrichment enrichment of k-mer in foreground relative to background
p.value associated p-value of enrichment
adj.p.value multiple testing corrected p-value

[Package transite version 1.2.0 Index]