generatePermutedEnrichments {transite} | R Documentation |
Calculates k-mer enrichment values for randomly sampled (without replacement) foreground sets.
generatePermutedEnrichments(n.transcripts.foreground, background.set, k, n.permutations = 1000, n.cores = 4)
n.transcripts.foreground |
number of transcripts in the original foreground set |
background.set |
character vector of DNA or RNA sequences that constitute the background set |
k |
length of k-mer, either |
n.permutations |
number of permutations to perform |
n.cores |
number of computing cores to use |
The result of calculateKmerEnrichment
for the
random foreground sets.
Other k-mer functions: calculateKmerEnrichment
,
checkKmers
,
computeKmerEnrichment
,
drawVolcanoPlot
,
empiricalEnrichmentMeanCDF
,
generateKmers
,
homopolymerCorrection
,
permTestGeometricMean
,
runKmerSPMA
, runKmerTSMA