plotIdeo {trackViewer}R Documentation

plot ideogram

Description

plot ideogram for one chromosome

Usage

plotIdeo(ideo, chrom = seqlevels(ideo)[1], colorSheme = gieStain(),
  gp = gpar(fill = NA), ...)

Arguments

ideo

output of loadIdeogram.

chrom

A length 1 character vector of chromosome name.

colorSheme

A character vector of giemsa stain colors.

gp

parameters used for grid.roundrect.

...

parameters not used.

Examples

## Not run: 
ideo <- loadIdeogram("hg38")
library(grid)
grid.newpage()
plotIdeo(ideo)

## End(Not run)



[Package trackViewer version 1.20.3 Index]