ExtractSingleDrug {synergyfinder} | R Documentation |
ExtractSingleDrug
extracts the dose-response values of single drug (
drug added in column or row) from a drug combination dose-response matrix.
ExtractSingleDrug(response.mat, dim = "row")
response.mat |
A drug cobination dose-response matrix. It's column name and row name are representing the concerntrations of drug added to column and row, respectively. The values in matrix indicate the inhibition rate to cell growth. |
dim |
A character. It should be either "col" or "row" to indicate which drug's dose-response value will be extracted. |
A data frame. It contains two variables:
dose The concertration of drug.
response The cell's response (inhibation rate) to corresponding drug concertration.
Shuyu Zheng shuyu.zheng@helsinki.fi
data("mathews_screening_data") data <- ReshapeData(mathews_screening_data) response.mat <- data$dose.response.mats[[1]] drug.row <- ExtractSingleDrug(response.mat, dim = "row")